Students
Graduate students (研究生)
劉承翰 (Apple)
2023.5 ~ (CCU研究生;111學年度秋季班)
研究課題 (Current projects)
1. Utilizing DNA aptamers for small molecule recognition through molecular dynamics simulations to predict binding mechanisms and sequences.
2. Probing Abeta-GM1 interaction via MD simulations
王葳翔（Wayne）
2023.6 ~ (CCU研究生;112學年度秋季班)
研究課題 (Current projects)
1. Protein-ligand interaction
2. All-atom MD simulation
陳宏毅 (Sam)
2023.6 ~ (CCU研究生;112學年度秋季班)
研究課題 (Current projects)
1. Protein structure prediction using Alpha Fold
2. Protein conformational change
張育誠 (Heery)
2024.9 ~ (CCU研究生；113學年度秋季班)
2022.7 - 2024.8 (TKU專題生)
研究課題 (Current projects)
1. Biological water dynamics of amyloid proteins
林奕廷 (Dylan)
2024.9 ~ (CCU研究生；112學年度秋季班)
研究課題 (Current projects)
1. Exploring the role of GM1 in Amyloid-beta aggregation using atomistic simulation.
陳倬舜 (Fred)
2025.9 (CCU 研究生；114學年度秋季班)
王冠方 (Debby)
2023.8 ~ (CCU研究生;112學年度秋季班)
研究課題 (Current projects)
1. Fibril surface-mediated diffusion dynamics of amyloid peptides using coarse-grained models
2. Effects of post-translational modification (PTM) on microbial amyloids.
3. Fibril structure modeling and polymorphism
葉星辰 (Yeh)
2024.9 ~ (CCU研究生；113學年度秋季班)
研究課題 (Current projects)
1. Exploring the Folding and Ligand Binding of G-Quadruplexes Using Molecular Dynamics Simulations.
楊采文 (Mina)
2025.9 (CCU 研究生；114學年度秋季班)
Undergraduate (專題生)
徐苡珊 (Ollie)
2023.12 ~ (CCU專題生)
研究課題 (Current projects)
1. Dynamics of intrinsic fluorophore in protein using QM/MM method
李亞真 (Jane)
2024.5 ~ (CCU專題生)
研究課題 (Current projects)
1. MD simulation of Niaproof/SDS molecules on the surfaces of carbon nanotube
2. Quantifying water diffusion behavior using molecular simulation.
傅宇韶 (Nick)
2025.6 ~ (CCU專題生)
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Past members
Graduate students (研究生)
魏亭宜 (Tina)
2025.6 畢業 (CCU 中正大學)
2023.3 ~ (CCU研究生;110學年度春季班)
研究課題 (Current projects)
1. Liquid-liguid phase separation (LLPS) of TDP-43 using coarse-grained simulation
2. Actin-filament network regulation by cofilin oligomerization using coarse-grained simulation
3. Functional binding analysis through frustration analysis
周芸楚（Anny）
2024.1 畢業 (TKU 淡江大學)
2023.2 ~ (TKU共同指導)
2021.3 - 2023.1 (TKU預研生)
研究課題 (Current projects)
1. Molecular dynamics of intrinsic tryptophan thermometer in protein BSA
2. All-atom molecular dynamics simulation
林彤祐 (Yoyo)
2024.1 畢業 (NTHU 清華大學)
2021.9 ~ (NTHU共同指導)
2018.10 ~ 2021.8 (TKU專題生)
研究課題 (Current projects)
1. Conformational dynamics of intrinsically disordered protein
2. Effect of structural restraints on amyloid-disrupting capacity
馬元偉 (Jeff)
2024.1 畢業 (NTHU 清華大學)
2021.9 ~ (NTHU共同指導)
2018.10 ~ 2021.8 (TKU專題生)
研究課題 (Current projects)
1. Stability of amyloid fibril using MD simulation
2. Surface-mediated amyloid formation
沈佳樑 (Ace)
專任研究助理 2019.12 ~ 2020.3
M.S. Physics, Rice University (2018)
萊斯大學物理系
B.S. Physics, National Tsing Hua University
清華大學物理系
研究課題 (Current projects)
1. Statistical Mechanics of protein aggregation
2. Deep learning in biophysical applications
3. Code Development & HPC management
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